Difference between revisions of "Main Page"
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Welcome to the GenomeView manual. These pages aim to answer any questions you may have as an end-user, a platform-user or as a contributing developer. | Welcome to the GenomeView manual. These pages aim to answer any questions you may have as an end-user, a platform-user or as a contributing developer. | ||
| − | This documentation is | + | This documentation is open for anyone to contribute to, just click the edit-button near the top and you can help make this a better resource for everyone. Due to increasing vandalism we were forced to shutdown anonymous editing and account sign-up. '''If you like an account, please drop a note to support@genomeview.org'''. |
| − | + | Feel free to copy documentation from the old manual to here, there are still some pages that need to be transferred and we're happy with any help you can spare. | |
| − | |||
| − | |||
| − | == | + | |
| + | == [[Quick start|Getting started with GenomeView in 5 minutes]] == | ||
| + | |||
<div style="float:left;width:49%"> | <div style="float:left;width:49%"> | ||
{{Box-header|title=User manual}} | {{Box-header|title=User manual}} | ||
These manual pages describe how to use GenomeView and how to prepare your data to be usable in GenomeView. | These manual pages describe how to use GenomeView and how to prepare your data to be usable in GenomeView. | ||
| + | |||
| + | [[Starting GenomeView]] | ||
| + | |||
| + | [[Preparing and loading data]] -- [[Preloaded data]] | ||
| + | |||
| + | [[Navigation]] -- [[Keyboard short-cuts]] | ||
| + | |||
| + | [[Visualizations]] | ||
| + | |||
| + | [[Search for...]] | ||
| + | |||
| + | [[Manipulating and configuring the views]] | ||
| + | |||
| + | [[Editing annotations]] | ||
| + | |||
| + | [[Exporting data and saving changes]] | ||
| + | |||
| + | [[More functionality with plugins]] | ||
| + | |||
</div> | </div> | ||
</div> | </div> | ||
| Line 25: | Line 44: | ||
[[Report a bug or request a feature]] | [[Report a bug or request a feature]] | ||
| + | |||
| + | [[Supported versions]] | ||
</div> | </div> | ||
| Line 37: | Line 58: | ||
{{Box-header|title=Platform-user manual}} | {{Box-header|title=Platform-user manual}} | ||
These manual pages describe how to integrate GenomeView with your web-based platform or how to communicate with GenomeView from 3-rd party software. | These manual pages describe how to integrate GenomeView with your web-based platform or how to communicate with GenomeView from 3-rd party software. | ||
| + | |||
| + | [[Using GenomeView from the command-line]] | ||
| + | |||
| + | [[Integration]] | ||
| + | |||
| + | [[Session files]] -- [[Configuration options]] | ||
| + | |||
| + | [[Communicating with GenomeView]] | ||
| + | |||
| + | [[Programming with GenomeView]] | ||
| + | |||
| + | [[Setting up authentication and encryption]] | ||
| + | |||
| + | [[Making a plugin]] | ||
| + | |||
| + | [[Integrating GenomeView as an editor]] | ||
| + | |||
| + | [[Setting up a Genome Explorer repository]] | ||
| + | |||
</div> | </div> | ||
</div> | </div> | ||
| Line 43: | Line 83: | ||
{{Box-header|title=Developer manual}} | {{Box-header|title=Developer manual}} | ||
These pages are aimed towards contributors to GenomeView and developers who work directly on the GenomeView code. | These pages are aimed towards contributors to GenomeView and developers who work directly on the GenomeView code. | ||
| + | |||
| + | Currently most of this documentation lives on [https://sourceforge.net/p/genomeview/wiki/ Sourceforge]. | ||
| + | |||
| + | [[Unit test example data files]] | ||
| + | |||
</div> | </div> | ||
</div> | </div> | ||
<div style="clear:both;"></div> | <div style="clear:both;"></div> | ||
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Latest revision as of 16:16, 3 June 2014
Welcome to the GenomeView manual. These pages aim to answer any questions you may have as an end-user, a platform-user or as a contributing developer.
This documentation is open for anyone to contribute to, just click the edit-button near the top and you can help make this a better resource for everyone. Due to increasing vandalism we were forced to shutdown anonymous editing and account sign-up. If you like an account, please drop a note to support@genomeview.org.
Feel free to copy documentation from the old manual to here, there are still some pages that need to be transferred and we're happy with any help you can spare.
Getting started with GenomeView in 5 minutes
User manual
These manual pages describe how to use GenomeView and how to prepare your data to be usable in GenomeView.
Preparing and loading data -- Preloaded data
Navigation -- Keyboard short-cuts
Manipulating and configuring the views
Getting help
Platform-user manual
These manual pages describe how to integrate GenomeView with your web-based platform or how to communicate with GenomeView from 3-rd party software.
Using GenomeView from the command-line
Session files -- Configuration options
Setting up authentication and encryption
Developer manual
These pages are aimed towards contributors to GenomeView and developers who work directly on the GenomeView code.
Currently most of this documentation lives on Sourceforge.