Bam2tdf

BAM2TDF is a command-line tool that converts BAM files to TDF (coverage) files.

You can download the latest version from the GenomeView nightly builds:

http://genomeview.org/jenkins/bam2tdf-nightly/

Instructions:

~$ java -jar bam2tdf.jar <location of your bam file>

Requirements: - Java 7+ - BAM file needs to be sorted and indexed