Difference between revisions of "Reducevcf"
Jump to navigation
Jump to search
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
reducevcf is a tool to reduce the size of VCF files. | reducevcf is a tool to reduce the size of VCF files. | ||
| + | |||
| + | It will remove all lines where the alternative allele matches the reference allele. In most cases this will reduce the VCF to less than 1% of its original size. | ||
==[http://www.genomeview.org/jenkins/reducevcf-nightly/ Download]== | ==[http://www.genomeview.org/jenkins/reducevcf-nightly/ Download]== | ||
| Line 5: | Line 7: | ||
The latest version of reduce VCF is available for [http://www.genomeview.org/jenkins/reducevcf-nightly/ download] from the GenomeView server. | The latest version of reduce VCF is available for [http://www.genomeview.org/jenkins/reducevcf-nightly/ download] from the GenomeView server. | ||
| + | == Usage == | ||
Usage: java -jar reducevcf.jar [options] | Usage: java -jar reducevcf.jar [options] | ||
| Line 14: | Line 17: | ||
-k | --keep | -k | --keep | ||
Keep ambiguous calls | Keep ambiguous calls | ||
| + | |||
| + | Example: java -jar reducevcf.jar -i myLargeVCFFile.vcf -o smallOutputFile.vcf | ||
[[Category:GenomeTools]] [[Category:User]] [[Category:Platform]] | [[Category:GenomeTools]] [[Category:User]] [[Category:Platform]] | ||
Latest revision as of 22:50, 3 September 2013
reducevcf is a tool to reduce the size of VCF files.
It will remove all lines where the alternative allele matches the reference allele. In most cases this will reduce the VCF to less than 1% of its original size.
Download
The latest version of reduce VCF is available for download from the GenomeView server.
Usage
Usage: java -jar reducevcf.jar [options]
-i <file> | --input <file> Input file -o <file> | --output <file> Output file -k | --keep Keep ambiguous calls
Example: java -jar reducevcf.jar -i myLargeVCFFile.vcf -o smallOutputFile.vcf